FUNPEP: Information system for "low complexity sequence regions".

Copyright (C) 1999, FUNPEP.

Multiple sequence alingment results for apolipoprotein A-I sequences from SWISSPROT.

APA1_CHICK      MRGVLVTLAVLFLTGTQARSFWQHDEP-QTPLDRIRDMVDVYLETVKASGKDAIAQFESS 59
APA1_COTJA      MRGVLVTLAVLFLTGTQARSFWQHDDP-QTPLDRIRDMLDVYLETVKASGKDAISQFESS 59
APA1_ANAPL      MRVVVVTLALLFLTGTQARYFWQHDEP-QAPLDRLRDLVDVYLETVKASGKDAIAQFEAS 59
APA1_MOUSE      MKAVVLAVALVFLTGSQAWHVWQQDEP-QSQWDKVKDFANVYVDAVKDSGRDYVSQFESS 59
APA1_RAT        MKAAVLAVALVFLTGCQAWEFWQQDEP-QSQWDRVKDFATVYVDAVKDSGRDYVSQFESS 59
APA1_HUMAN      MKAAVLTLAVLFLTGSQARHFWQQDEPPQSPWDRVKDLATVYVDVLKDSGRDYVSQFEGS 60
APA1_MACFA      MKATVLTLAVLFLTGSQARHFWQQDEPPQTPWDRVKDLVTVYVEALKDSGKDYVSQFEGS 60
APA1_PIG        MKAVVLTLAVLFLTGSQARHFWQQDDP-QSPWDRVKDFATVYVDAIKDSGRDYVAQFEAS 59
APA1_BOVIN      MKAVVLTLAVLFLTGSQARHFWQQDDP-QSSWDRVKDFATVYVEAIKDSGRDYVAQFEAS 59
APA1_CANFA      MKAALLTLAVLFLTGSQARHFWQQDEP-QSPWDRVKDLATVYVDAVKDSGRDYVAQFEAS 59
APA1_RABIT      MKAVVLTLAVLFLTGSQARHFWQRDEP-RSSWDKIKDFATVYVDTVKDSGREYVAQFEAS 59
APA1_TUPGB      MKAVVLTLAVLFLTGSQARHFWQQDEP-QSSWDRVRDLANVYVDAVKESGREYVSQLEAS 59
APA1_BRARE      MKFVALALTLLLALGSQAN-LFQADAP--TQLEHYKAAALVYLNQVKDQAEKALDNLDGT 57
APA1_SALSA      MKFLVLALTILLAAGTQAF-PMQADAP--SQLEHVKAALNMYIAQVKLTAQRSIDLLDDT 57
                *:   :::::::  * **    * * *  :  :: :    :*:  :*  ..  :  :: :

APA1_CHICK      AVGKQLDLKLADNLDTLSAAAAKLREDMAPYYKEVREMWLKDTEALRAELTKDLEEVKEK 119
APA1_COTJA      AVGKQLDLKLADNLDTLSAAAAKLREDMTPYYREVREMWLKDTEALRAELTKDLEEVKEK 119
APA1_ANAPL      AVGKQLDLKLADNLDTLGAAAAKLREDMAPYYKEVREMWLKDTESLRAELTKDLEEVKEK 119
APA1_MOUSE      SLGQQLNLNLLENWDTLGSTVSQLQERLGPLTRDFWDNLEKETDWVRQEMNKDLEEVKQK 119
APA1_RAT        TLGKQLNLNLLDNWDTLGSTVGRLQEQLGPVTQEFWANLEKETDWLRNEMNKDLENVKQK 119
APA1_HUMAN      ALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAK 120
APA1_MACFA      ALGKQLNLKLLDNWDSVTSTVSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAK 120
APA1_PIG        ALGKHLNLKLLDNWDSLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKK 119
APA1_BOVIN      ALGKQLNLKLLDNWDTLASTLSKVREQLGPVTQEFWDNLEKETASLRQEMHKDLEEVKQK 119
APA1_CANFA      ALGKQLNLKLLDNWDSLSSTVTKLREQIGPVTQEFWDNLEKETEVLRQEMSKDLEEVKQK 119
APA1_RABIT      AFGKQLNLKLLDNWDSLSSTVSKLQEQLGPVTQEFWDNLEKETEGLREEMNKDLQEVRQK 119
APA1_TUPGB      ALGKQLNLKLVDNWDTLGSTFQKVHEHLGPVAQEFWEKLEKETEELRREINKDLEDVRQK 119
APA1_BRARE      DY-EQYKLQLSESLTKLQEYAQTTSQALTPYAETISTQLMENTKQLRERVMTDVEDLRSK 116
APA1_SALSA      EY-KEYKMQLSQSLDNLQQFADSTSKSWPPTPRS-SAPSCDATATVRAEVMKDVEDVRTQ 115
                   :. .::* :.  .:        :   *  .       . *  :* .: .*::::: :

APA1_CHICK      IRPFLDQFSAKWTEELEQYRQRLTPVAQELKELTKQKVELMQAKLTPVAEEARDRLRGHV 179
APA1_COTJA      IRPFLDQFSAKWTEEVEQYRQRLAPVAQELKDLTKQKVELMQAKLTPVAEEVRDRLREQV 179
APA1_ANAPL      IRPFLDQFSAKWTEELEQYRQRLAPVAEELKELTKQKVELMQQKLTPVAEEARDRLRGHV 179
APA1_MOUSE      VQPYLDEFQKKWKEDVELYRQKVAPLGAELQESARQKLQELQGRLSPVAEEFRDRMRTHV 179
APA1_RAT        MQPHLDEFQEKWNEEVEAYRQKLEPLGTELHKNA----KEMQRHLKVVAEEFRDRMRVNA 175
APA1_HUMAN      VQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHV 180
APA1_MACFA      VQPYLDDFQKKWQEEMELYRQKVEPLRAELHEGTRQKLHELHEKLSPLGEEVRDRARAHV 180
APA1_PIG        VQPYLDDFQNKWQEEMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHV 179
APA1_BOVIN      VQPYLDEFQKKWHEEVEIYRQKVAPLGEEFREGARQKVQELQDKLSPLAQELRDRARAHV 179
APA1_CANFA      VQPYLDDFQKKWQEEVELYRQKVAPLGSELREGARQKLQELQEKLSPLAEELRDRARTHV 179
APA1_RABIT      VQPYLDEFQKKWQEEVERYRQKVEPLGAELRESARQKLTELQEKLSPLAEELRDSARTHV 179
APA1_TUPGB      TQPFLDEIQKKWQEDLERYRQKVEPLSAQLREGARQKLMELQEQVTPLGEDLRDSVRAYA 179
APA1_BRARE      LEPHRAELYTALQKHIDEYREKLEPVFQEYSALNRQNAEQLRAKLEPLMDDIRKAFESNI 176
APA1_SALSA      LEPKRAELTEVLNKHIDEYRKKLEPLIKQHIELRRTEMDAFRAKIDPVVEEMRAKVAVNV 175
                 .*   ::     :.:: **::: *:  :           :: ::  : :: *       

APA1_CHICK      EELRKNLAPYSDELRQKLSQKLEEIREKGIPQASEYQAKVMEQLSNLREKMTPLVQEFRE 239
APA1_COTJA      EELRKNLAPYSSELRQKLSQKLEEIRERGIPQASEYQAKVVEQLSNLREKMTPLVQEFKE 239
APA1_ANAPL      EELRKNLAPYSDELRQKLSQKLEEIREKGIPQAAEYQAKVVEQLSNLREKMTPLVQDFKE 239
APA1_MOUSE      DSLRTQLAPHSEQMRESLAQRLAELKSNP--TLNEYHTRAKTHLKTLGEKARPALEDLRH 237
APA1_RAT        DALRAKFGLYSDQMRENLAQRLTEIRNHP--TLIEYHTKAGDHLRTLGEKAKPALDDLGQ 233
APA1_HUMAN      DALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQ 240
APA1_MACFA      DALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKASEHLSTLSEKAKPALEDLRQ 240
APA1_PIG        EALRQHVAPYSDDLRQRMAARFEALKEGGG-SLAEYQAKAQEQLKALGEKAKPALEDLRQ 238
APA1_BOVIN      ETLRQQLAPYSDDLRQRLTARLEALKEGGG-SLAEYHAKASEQLKALGEKAKPVLEDLRQ 238
APA1_CANFA      DALRAQLAPYSDDLRERLAARLEALKEGGGASLAEYHARASEQLSALGEKARPALEDLRQ 239
APA1_RABIT      DTLRTKLAPYSNELQQRLAARLESIKEGGGASLAEYQAKAREHLSVLSEKARPALEDLRQ 239
APA1_TUPGB      DTLRTQLAPYSEQMRKTLGARLEAIKEGGSASLAEYHAKASEQLSALGEKAKPVLEDIHQ 239
APA1_BRARE      EETKSKVVPMVEAVRTKLTERLEDLRTMAAPYAEEYKEQLVKAVEEAREKIAPHTQDLQT 236
APA1_SALSA      EETKTKLMPIVEIVRAKLTERLEELRTLAAPYAEEYKEQMFKAVGEVREKVAPLSEDFKA 235
                :  : :.    . ::  :  ::  ::        **: :    :    **  *  :::  

APA1_CHICK      RLTPYAENLKNRLISFLDELQKSVA-- 264
APA1_COTJA      RLTPYAENLKNRLIDLLDEVQKTMA-- 264
APA1_ANAPL      RLTPYAENLKTRFISLLDELQKTVA-- 264
APA1_MOUSE      SLMPMLETLKTKAQSVIDKASETLTAQ 264
APA1_RAT        GLMPVLEAWKAKIMSMIDEAKKKLNA- 259
APA1_HUMAN      GLLPVLESFKVSFLSALEEYTKKLNTQ 267
APA1_MACFA      GLLPVLESFKVSFLSALEEYTKKLSTQ 267
APA1_PIG        GLLPVLENLKVSILAAIDEASKKLNAQ 265
APA1_BOVIN      GLLPVLESLKVSILAAIDEASKKLNAQ 265
APA1_CANFA      GLLPVLESFKVSLLAAIDEATKKLNAQ 266
APA1_RABIT      GLLPVLESFKASVQNVLDEATKKLNTQ 266
APA1_TUPGB      GLMPMWESFKTGVLNVIDEAAKKLTA- 265
APA1_BRARE      RMEPYMENVRTTFAQMYETIAKAIQA- 262
APA1_SALSA      RWAPPPR--RPSKSSWLSTRPSARP-- 258
                   *  .  :       .   .

Gergo Kiss 30th March 1999 EMBL/Szeged