FUNPEP: Information system for "low complexity sequence regions".

Copyright (C) 1999, FUNPEP.

The Apolipoprotein A-I sequences from SWISSPROT. The multiple sequence alingment result is here.

>APA1_HUMAN
MKAAVLTLAV LFLTGSQARH FWQQDEPPQS PWDRVKDLAT VYVDVLKDSG RDYVSQFEGS 
ALGKQLNLKL LDNWDSVTST FSKLREQLGP VTQEFWDNLE KETEGLRQEM SKDLEEVKAK 
VQPYLDDFQK KWQEEMELYR QKVEPLRAEL QEGARQKLHE LQEKLSPLGE EMRDRARAHV 
DALRTHLAPY SDELRQRLAA RLEALKENGG ARLAEYHAKA TEHLSTLSEK AKPALEDLRQ 
GLLPVLESFK VSFLSALEEY TKKLNTQ

>APA1_MACFA
MKATVLTLAV LFLTGSQARH FWQQDEPPQT PWDRVKDLVT VYVEALKDSG KDYVSQFEGS 
ALGKQLNLKL LDNWDSVTST VSKLREQLGP VTQEFWDNLE KETEGLRQEM SKDLEEVKAK 
VQPYLDDFQK KWQEEMELYR QKVEPLRAEL HEGTRQKLHE LHEKLSPLGE EVRDRARAHV 
DALRTHLAPY SDELRQRLAA RLEALKENGG ARLAEYHAKA SEHLSTLSEK AKPALEDLRQ 
GLLPVLESFK VSFLSALEEY TKKLSTQ

>APA1_CANFA
MKAALLTLAV LFLTGSQARH FWQQDEPQSP WDRVKDLATV YVDAVKDSGR DYVAQFEASA 
LGKQLNLKLL DNWDSLSSTV TKLREQIGPV TQEFWDNLEK ETEVLRQEMS KDLEEVKQKV 
QPYLDDFQKK WQEEVELYRQ KVAPLGSELR EGARQKLQEL QEKLSPLAEE LRDRARTHVD 
ALRAQLAPYS DDLRERLAAR LEALKEGGGA SLAEYHARAS EQLSALGEKA RPALEDLRQG 
LLPVLESFKV SLLAAIDEAT KKLNAQ

>APA1_PIG
MKAVVLTLAV LFLTGSQARH FWQQDDPQSP WDRVKDFATV YVDAIKDSGR DYVAQFEASA 
LGKHLNLKLL DNWDSLGSTF TKVREQLGPV TQEFWDNLEK ETEALRQEMS KDLEEVKKKV 
QPYLDDFQNK WQEEMETYRQ KMAPLGAEFR EGARQKVQEL QEKLSPLAEE LRDRLRAHVE 
ALRQHVAPYS DDLRQRMAAR FEALKEGGGS LAEYQAKAQE QLKALGEKAK PALEDLRQGL 
LPVLENLKVS ILAAIDEASK KLNAQ

>APA1_RABIT
MKAVVLTLAV LFLTGSQARH FWQRDEPRSS WDKIKDFATV YVDTVKDSGR EYVAQFEASA 
FGKQLNLKLL DNWDSLSSTV SKLQEQLGPV TQEFWDNLEK ETEGLREEMN KDLQEVRQKV 
QPYLDEFQKK WQEEVERYRQ KVEPLGAELR ESARQKLTEL QEKLSPLAEE LRDSARTHVD 
TLRTKLAPYS NELQQRLAAR LESIKEGGGA SLAEYQAKAR EHLSVLSEKA RPALEDLRQG 
LLPVLESFKA SVQNVLDEAT KKLNTQ

>APA1_BOVIN
MKAVVLTLAV LFLTGSQARH FWQQDDPQSS WDRVKDFATV YVEAIKDSGR DYVAQFEASA 
LGKQLNLKLL DNWDTLASTL SKVREQLGPV TQEFWDNLEK ETASLRQEMH KDLEEVKQKV 
QPYLDEFQKK WHEEVEIYRQ KVAPLGEEFR EGARQKVQEL QDKLSPLAQE LRDRARAHVE 
TLRQQLAPYS DDLRQRLTAR LEALKEGGGS LAEYHAKASE QLKALGEKAK PVLEDLRQGL 
LPVLESLKVS ILAAIDEASK KLNAQ

>APA1_TUPGB
MKAVVLTLAV LFLTGSQARH FWQQDEPQSS WDRVRDLANV YVDAVKESGR EYVSQLEASA 
LGKQLNLKLV DNWDTLGSTF QKVHEHLGPV AQEFWEKLEK ETEELRREIN KDLEDVRQKT 
QPFLDEIQKK WQEDLERYRQ KVEPLSAQLR EGARQKLMEL QEQVTPLGED LRDSVRAYAD 
TLRTQLAPYS EQMRKTLGAR LEAIKEGGSA SLAEYHAKAS EQLSALGEKA KPVLEDIHQG 
LMPMWESFKT GVLNVIDEAA KKLTA

>APA1_MOUSE
MKAVVLAVAL VFLTGSQAWH VWQQDEPQSQ WDKVKDFANV YVDAVKDSGR DYVSQFESSS 
LGQQLNLNLL ENWDTLGSTV SQLQERLGPL TRDFWDNLEK ETDWVRQEMN KDLEEVKQKV 
QPYLDEFQKK WKEDVELYRQ KVAPLGAELQ ESARQKLQEL QGRLSPVAEE FRDRMRTHVD 
SLRTQLAPHS EQMRESLAQR LAELKSNPTL NEYHTRAKTH LKTLGEKARP ALEDLRHSLM 
PMLETLKTKA QSVIDKASET LTAQ

>APA1_RAT
MKAAVLAVAL VFLTGCQAWE FWQQDEPQSQ WDRVKDFATV YVDAVKDSGR DYVSQFESST 
LGKQLNLNLL DNWDTLGSTV GRLQEQLGPV TQEFWANLEK ETDWLRNEMN KDLENVKQKM 
QPHLDEFQEK WNEEVEAYRQ KLEPLGTELH KNAKEMQRHL KVVAEEFRDR MRVNADALRA 
KFGLYSDQMR ENLAQRLTEI RNHPTLIEYH TKAGDHLRTL GEKAKPALDD LGQGLMPVLE 
AWKAKIMSMI DEAKKKLNA

>APA1_ANAPL
MRVVVVTLAL LFLTGTQARY FWQHDEPQAP LDRLRDLVDV YLETVKASGK DAIAQFEASA 
VGKQLDLKLA DNLDTLGAAA AKLREDMAPY YKEVREMWLK DTESLRAELT KDLEEVKEKI 
RPFLDQFSAK WTEELEQYRQ RLAPVAEELK ELTKQKVELM QQKLTPVAEE ARDRLRGHVE 
ELRKNLAPYS DELRQKLSQK LEEIREKGIP QAAEYQAKVV EQLSNLREKM TPLVQDFKER 
LTPYAENLKT RFISLLDELQ KTVA

>APA1_CHICK
MRGVLVTLAV LFLTGTQARS FWQHDEPQTP LDRIRDMVDV YLETVKASGK DAIAQFESSA 
VGKQLDLKLA DNLDTLSAAA AKLREDMAPY YKEVREMWLK DTEALRAELT KDLEEVKEKI 
RPFLDQFSAK WTEELEQYRQ RLTPVAQELK ELTKQKVELM QAKLTPVAEE ARDRLRGHVE 
ELRKNLAPYS DELRQKLSQK LEEIREKGIP QASEYQAKVM EQLSNLREKM TPLVQEFRER 
LTPYAENLKN RLISFLDELQ KSVA

>APA1_COTJA
MRGVLVTLAV LFLTGTQARS FWQHDDPQTP LDRIRDMLDV YLETVKASGK DAISQFESSA 
VGKQLDLKLA DNLDTLSAAA AKLREDMTPY YREVREMWLK DTEALRAELT KDLEEVKEKI 
RPFLDQFSAK WTEEVEQYRQ RLAPVAQELK DLTKQKVELM QAKLTPVAEE VRDRLREQVE 
ELRKNLAPYS SELRQKLSQK LEEIRERGIP QASEYQAKVV EQLSNLREKM TPLVQEFKER 
LTPYAENLKN RLIDLLDEVQ KTMA

>APA1_BRARE
MKFVALALTL LLALGSQANL FQADAPTQLE HYKAAALVYL NQVKDQAEKA LDNLDGTDYE 
QYKLQLSESL TKLQEYAQTT SQALTPYAET ISTQLMENTK QLRERVMTDV EDLRSKLEPH 
RAELYTALQK HIDEYREKLE PVFQEYSALN RQNAEQLRAK LEPLMDDIRK AFESNIEETK 
SKVVPMVEAV RTKLTERLED LRTMAAPYAE EYKEQLVKAV EEAREKIAPH TQDLQTRMEP 
YMENVRTTFA QMYETIAKAI QA

>APA1_SALSA
MKFLVLALTI LLAAGTQAFP MQADAPSQLE HVKAALNMYI AQVKLTAQRS IDLLDDTEYK 
EYKMQLSQSL DNLQQFADST SKSWPPTPRS SAPSCDATAT VRAEVMKDVE DVRTQLEPKR 
AELTEVLNKH IDEYRKKLEP LIKQHIELRR TEMDAFRAKI DPVVEEMRAK VAVNVEETKT 
KLMPIVEIVR AKLTERLEEL RTLAAPYAEE YKEQMFKAVG EVREKVAPLS EDFKARWAPP 
PRRPSKSSWL STRPSARP



Gergo Kiss 30th March 1999 EMBL/Szeged