FUNPEP: Information system for "low complexity sequence regions".

Copyright (C) 1999, FUNPEP.

Multiple sequence alingment results for our beta peptide sequences from SWISSPROT.

A4_RABIT        ------------------------------------------------------------
A4_SHEEP        ------------------------------------------------------------
A4_CANFA        ------------------------------------------------------------
A4_PIG          ------------------------------------------------------------
A4_URSMA        ------------------------------------------------------------
A4_BOVIN        ------------------------------------------------------------
A4_HUMAN        MLPGLALLLLAAWTARALEVPTDGNAGLLAEPQIAMFCGRLNMHMNVQNGKWDSDPSGTK 60
A4_SAISC        MLPGLALLLLAAWTARALEVPTDGNAGLLAEPQIAMFCGRLNMHMNVQNGKWDSDPSGTK 60
A4_MOUSE        MLPSLALLLLAAWTVRALEVPTDGNAGLLAEPQIAMFCGKLNMHMNVQNGKWESDPSGTK 60
A4_RAT          MLPSLALLLLAAWTVRALEVPTDGNAGLLAEPQIAMFCGKLNMHMNVQNGKWESDPSGTK 60
                                                                            

A4_RABIT        ------------------------------------------------------------
A4_SHEEP        ------------------------------------------------------------
A4_CANFA        ------------------------------------------------------------
A4_PIG          ------------------------------------------------------------
A4_URSMA        ------------------------------------------------------------
A4_BOVIN        ------------------------------------------------------------
A4_HUMAN        TCIDTKEGILQYCQEVYPELQITNVVEANQPVTIQNWCKRGRKQCKTHPHFVIPYRCLVG 120
A4_SAISC        TCIDTKEGILQYCQEVYPELQITNVVEANQPVTIQNWCKRDRKQCKTHPHIVIPYRCLVG 120
A4_MOUSE        TCIGTKEGILQYCQEVYPELQITNVVEANQPVTIQNWCKRGRKQCKTHTHIVIPYRCLVG 120
A4_RAT          TCIGTKEGILQYCQEVYPELQITNVVEANQPVTIQNWCKRGRKQCKTHTHIVIPYRCLVG 120
                                                                            

A4_RABIT        ------------------------------------------------------------
A4_SHEEP        ------------------------------------------------------------
A4_CANFA        ------------------------------------------------------------
A4_PIG          ------------------------------------------------------------
A4_URSMA        ------------------------------------------------------------
A4_BOVIN        ------------------------------------------------------------
A4_HUMAN        EFVSDALLVPDKCKFLHQERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFR 180
A4_SAISC        EFVSDALLVPDKCKFLHQERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFR 180
A4_MOUSE        EFVSDALLVPDKCKFLHQERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFR 180
A4_RAT          EFVSDALLVPDKCKFLHQERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFR 180
                                                                            

A4_RABIT        ------------------------------------------------------------
A4_SHEEP        ------------------------------------------------------------
A4_CANFA        ------------------------------------------------------------
A4_PIG          ------------------------------------------------------------
A4_URSMA        ------------------------------------------------------------
A4_BOVIN        ------------------------------------------------------------
A4_HUMAN        GVEFVCCPLAEESDNVDSADAEEDDSDVWWGGADTDYADGSEDKVVEVAEEEEVAEVEEE 240
A4_SAISC        GVEFVCCPLAEESDHVDSADAEEDDSDVWWGGADTDYADGSEDKVVEVAEEEEVAEVEEE 240
A4_MOUSE        GVEFVCCPLAEESDSVDSADAEEDDSDVWWGGADTDYADGSEDKVVEVAEEEEVADVEEE 240
A4_RAT          GVEFVCCPLAEESDSIDSADAEEDDSDVWWGGADTDYADGGEDKVVEVAEEEEVADVEEE 240
                                                                            

A4_RABIT        ------------------------------------------------------------
A4_SHEEP        ------------------------------------------------------------
A4_CANFA        ------------------------------------------------------------
A4_PIG          ------------------------------------------------------------
A4_URSMA        ------------------------------------------------------------
A4_BOVIN        ------------------------------------------------------------
A4_HUMAN        EADDDEDDEDGDEVEEEAEEPYEEATERTTSIATTTTTTTESVEEVVREVCSEQAETGPC 300
A4_SAISC        EADDDEDDEDGDEVEEEAEEPYEEATERTTSIATTTTTTTESVEEVVREVCSEQAETGPC 300
A4_MOUSE        EADDDEDVEDGDEVEEEAEEPYEEATERTTSTATTTTTTTESVEEVVREVCSEQAETGPC 300
A4_RAT          EAEDDEDVEDGDEVEEEAEEPYEEATERTTSIATTTTTTTESVEEVVREVCSEQAETGPC 300
                                                                            

A4_RABIT        ------------------------------------------------------------
A4_SHEEP        ------------------------------------------------------------
A4_CANFA        ------------------------------------------------------------
A4_PIG          ------------------------------------------------------------
A4_URSMA        ------------------------------------------------------------
A4_BOVIN        ------------------------------------------------------------
A4_HUMAN        RAMISRWYFDVTEGKCAPFFYGGCGGNRNNFDTEEYCMAVCGSAMSQSLLKTTQEPLARD 360
A4_SAISC        RAMISRWYFDVTEGKCAPFFYGGCGGNRNNFDTEEYCMAVCG------------------ 342
A4_MOUSE        RAMISRWYFDVTEGKCVPFFYGGCGGNRNNFDTEEYCMAVCGSVSTQSLLKTTSEPLPQD 360
A4_RAT          RAMISRWYFDVTEGKCAPFFYGGCGGNRNNFDTEEYCMAVCGSVSSQSLLKTTSEPLPQD 360
                                                                            

A4_RABIT        ------------------------------------------------------------
A4_SHEEP        ------------------------------------------------------------
A4_CANFA        ------------------------------------------------------------
A4_PIG          ------------------------------------------------------------
A4_URSMA        ------------------------------------------------------------
A4_BOVIN        ------------------------------------------------------------
A4_HUMAN        PVKLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQA 420
A4_SAISC        -SVIPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQA 401
A4_MOUSE        PDKLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQA 420
A4_RAT          PVKLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQA 420
                                                                            

A4_RABIT        ------------------------------------------------------------
A4_SHEEP        ------------------------------------------------------------
A4_CANFA        ------------------------------------------------------------
A4_PIG          ------------------------------------------------------------
A4_URSMA        ------------------------------------------------------------
A4_BOVIN        ------------------------------------------------------------
A4_HUMAN        KNLPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITAL 480
A4_SAISC        KNLPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITAL 461
A4_MOUSE        KNLPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITAL 480
A4_RAT          KNLPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITAL 480
                                                                            

A4_RABIT        ------------------------------------------------------------
A4_SHEEP        ------------------------------------------------------------
A4_CANFA        ------------------------------------------------------------
A4_PIG          ------------------------------------------------------------
A4_URSMA        ------------------------------------------------------------
A4_BOVIN        ------------------------------------------------------------
A4_HUMAN        QAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYER 540
A4_SAISC        QAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYER 521
A4_MOUSE        QAVPPRPHHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYER 540
A4_RAT          QAVPPRPHHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYER 540
                                                                            

A4_RABIT        ------------------------------------------------------------
A4_SHEEP        ------------------------------------------------------------
A4_CANFA        ------------------------------------------------------------
A4_PIG          ------------------------------------------------------------
A4_URSMA        ------------------------------------------------------------
A4_BOVIN        ------------------------------------------------------------
A4_HUMAN        MNQSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTET 600
A4_SAISC        MNQSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTET 581
A4_MOUSE        MNQSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTET 600
A4_RAT          MNQSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTET 600
                                                                            

A4_RABIT        ------------------------------------------------------------
A4_SHEEP        ------------------------------------------------------------
A4_CANFA        ------------------------------------------------------------
A4_PIG          ------------------------------------------------------------
A4_URSMA        ------------------------------------------------------------
A4_BOVIN        ------------------------------------------------------------
A4_HUMAN        KTTVELLPVNGEFSLDDLQPWHSFGADSVPANTENEVEPVDARPAADRGLTTRPGSGLTN 660
A4_SAISC        KTTVELLPVNGEFSLDDLQPWHSFGADSVPANTENEVEPVDARPAADRGLTTRPGSGLTN 641
A4_MOUSE        KTTVELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARPAADRGLTTRPGSGLTN 660
A4_RAT          KTTVELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARPAADRGLTTRPGSGLTN 660
                                                                            

A4_RABIT        ------SEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITL 54
A4_SHEEP        ------SEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITL 54
A4_CANFA        -----ISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITL 55
A4_PIG          ------SEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITL 54
A4_URSMA        ------SEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITL 54
A4_BOVIN        -----ISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITL 55
A4_HUMAN        IKTEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITL 720
A4_SAISC        IKTEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITL 701
A4_MOUSE        IKTEEISEVKMDAEFGHDSGFEVRHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITL 720
A4_RAT          IKTEEISEVKMDAEFGHDSGFEVRHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITL 720
                      ********* ****:**:************************************

A4_RABIT        VMLK---------------------------------------------- 58
A4_SHEEP        VMLK---------------------------------------------- 58
A4_CANFA        VML----------------------------------------------- 58
A4_PIG          VML----------------------------------------------- 57
A4_URSMA        VML----------------------------------------------- 57
A4_BOVIN        VMLK---------------------------------------------- 59
A4_HUMAN        VMLKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 770
A4_SAISC        VMLKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 751
A4_MOUSE        VMLKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 770
A4_RAT          VMLKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 770
                ***

Gergo Kiss 30th March 1999 EMBL/Szeged