FUNPEP: Information system for "low complexity sequence regions".

Copyright (C) 1999, FUNPEP.

Multiple sequence alingment results for calcitonin sequences from SWISSPROT.

CAL0_RAT        MGFLKFSPFLVVS-ILLLYQACGLQAVPLRSTLESSPG-MATLSEEEAR-LLAALVQNYM 57
CAL0_MOUSE      MGFLKFSPFLVVS-ILLLYQACSLQAVPLRSILESSPG-MATLSEEEVR-LLAALVQDYM 57
CAL0_HUMAN      MGFQKFSPFLALS-ILVLLQAGSLHAAPFRSALESSPADPATLSEDEARLLLAALVQDYV 59
CAL_SHEEP       MGFGKSSPFLAFS-ILVLCQAGSLQATPLRSALETLPD-PGALSEKEGRLLLAALVKAYV 58
CAL_CANFA       --------------------------APFRSALEGLPD-PTALSEKKGRLNLQ------- 26
CAL1_HUMAN      MGFQKFSPFLALS-ILVLLQAGSLHAAPFRSALESSPADPATLSEDEARLLLAALVQDYV 59
CAL2_HUMAN      MGFRKFSPFLALS-ILVLYQAGSLQAAPFRSALESSP-DPATLSKEDARLLLAALVQDYV 58
CAL1_RAT        MGFLKFSPFLVVS-ILLLYQACGLQAVPLRSTLESSPGMAATLSEEEARLLLAALVQNYM 59
CAL2_RAT        MDFWKFFPFLALSSMWVLCLASSLQAAPFRSALESS-LDLGTLSDQEKHLLLAALIQDYE 59
CALR_CHICK      MVMLKISSFLAVY-ALVVCQMDSFQAAPVRPGLESIT-DRVTLSDYEARRLLNALVKDFI 58
CAL_CHICK       MVMLKISSFLAVY-ALVVCQMDSFQAAPVRPGLESIT-DRVTLSDYEARRLLNALVKDFI 58
CAL1_ONCKE      MVMMKLSALLIAY-FLVICQMYSSHAAPARTGLESMT-DQVTLTDYEARRLLNAIVKEFV 58
                                          .* *. **       :*:. . :  *        

CAL0_RAT        QMKVRELEQEEEQE-AEGS----SLDSPRSKRCGNLSTCMLGTYTQDLNK-----FHTFP 107
CAL0_MOUSE      QMKARELEQEEEQE-AEGS----SLDSPRSKRCGNLSTCMLGTYTQDLNK-----FHTFP 107
CAL0_HUMAN      QMKASELEQ--EQE-REGS----SLDSPRSKRCGNLSTCMLGTYTQDFNK-----FHTFP 107
CAL_SHEEP       QRKTNELEQEEEQEETEDS----SLDSSRAKRCSNLSTCVLSAYWKDLNN-----YHRYS 109
CAL_CANFA       -----E--QEQEQE-TEGS----SLDSSRAKRCSNLSTCVLGTYSKDLNN-----FHTFS 69
CAL1_HUMAN      QMKASELEQE--QE-REGS------RIIAQKRACDTATCVTHRLAGLLSRSGGVVKNNFV 110
CAL2_HUMAN      QMKASELKQE--QE-TQGS------SSAAQKRACNTATCVTHRLAGLLSRSGGMVKSNFV 109
CAL1_RAT        QMKVRELEQE--QE-AEGS------SVTAQKRSCNTATCVTHRLAGLLSRSGGVVKDNFV 110
CAL2_RAT        Q-KARKLEQEE-QE-TEGSRKGSSSSVISQKRSCNTATCVTHRLAGLLRRSGGVVKDNFV 116
CALR_CHICK      QMTAEELEQA-----SEGN------SVTAQKRACNTATCVTHRLADFLSRSGGVGKNNFV 107
CAL_CHICK       QMTAEELEQ-----ASEGN----SLDRPISKRCASLSTCVLGKLSQELHK-----LQTYP 104
CAL1_ONCKE      QMTSEELEQQ----ANEGN----SLDRPMSKRCSNLSTCVLGKLSQELHK-----LQTYP 105
                     :  *       :..           **. . :**:       : .        : 

CAL0_RAT        QTSIGVGAPGKKRDMAKDLETNHHPYFGN----- 136
CAL0_MOUSE      QTSIGVEAPGKKRDVAKDLETNHQSHFGN----- 136
CAL0_HUMAN      QTAIGVGAPGKKRDMSSDLERDHRPHVSMPQNAN 141
CAL_SHEEP       GMGFGPETPGKKRDIANSLEKDLSSHFGVPTDAN 143
CAL_CANFA       GIGFGAETPGKKRDIASGLERGR----------- 92
CAL1_HUMAN      PTNVGSKAFGRRR---RDLQA------------- 128
CAL2_HUMAN      PTNVGSKAFGRRR---RDLQA------------- 127
CAL1_RAT        PTNVGSEAFGRRR---RDLQA------------- 128
CAL2_RAT        PTNVGSKAFGRRR---RDLRV------------- 134
CALR_CHICK      PTNVGSKAFGRRR---RSVQI------------- 125
CAL_CHICK       RTDVGAGTPGKKRNVLNDLDHERYANYGETLGNN 138
CAL1_ONCKE      RTNTGSGTPGKKRSLP---ESNRYASYGDSYDGI 136
                    *  : *::*

Gergo Kiss 14th April 1999 EMBL/Szeged