FUNPEP: Information system for "low complexity sequence regions".

Copyright (C) 1999, FUNPEP.

Multiple sequence alingment results for lysozyme sequences from SWISSPROT.

LYC_MACMU       MKAVIILGLVLLSVTVQGKIFERCELARTLKRLGLDGYRGISLANWVCLAKWESNYNTQA
LYC_PAPAN       MKAVIILGLVLLSVTVQGKIFERCELARTLKRLGLDGYRGISLANWVCLAKWESDYNTQA
LYC_MIOTA       MKAVIILGLVLLSVTVQGKIFERCELARTLKRLGLDGYRGISLANWVCLAKWESDYNTQA
LYC_ALLNI       MKAVIILGLVLLSVTVQGKIFERCELARTLKRLGLDGYRGISLANWVCLAKWESDYNTQA
LYC_CERAE       MKAVIILGLVLLSVTVQGKIFERCELARTLKRLGLDGYRGISLANWVCLAKWESGYNTQA
LYC_PYGNE       MKALIILGLVLLSVTVQGKIFERCELARTLKKLGLDGYKGVSLANWVCLAKWESGYNTEA
LYC_PREEN       MKALTILGLVLLSVTVQGKIFERCELARTLKKLGLDGYKGVSLANWVCLAKWESGYNTEA
LYC_NASLA       MKALIILGLVLLSVTVQGKIFERCELARTLKKLGLDGYKGVSLANWVCLAKWESGYNTEA
LYC_COLAN       MKALIILGLVLLSVTVQGKIFERCELARTLKKLGLDGYKGVSLANWVCLAKWESGYNTDA
LYC_HUMAN       MKALIVLGLVLLSVTVQGKVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRA
LYC_GORGO       MKALIVLGLVLLSVMVQGKVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRA
LYC_PONPY       MKALIILGLVLLSVTVQSKVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRA
LYC_HYLLA       MKALIILGLVLLSVMVQAKVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRA
LYC_SAGOE       MKVLILLGLVLLSVMVQGKVFERCELARTLKRLGLDGYRGISLANWMCLAKWESDYNTRA
LYC_CALJA       MKVLIILGLVLLSVMVQGKVFERCELARTLKRFGLDGYRGISLANWMCLAKWESDYNTRA
LYC_SAISC       MKVLVILGLVLLSVMVQGKVFERCELARTLKRLGMDGYRGISLANWMCLAKWESDYNTRA
                **.: :******** **.*:***********::*:***:*:*****:*******.*** *

LYC_MACMU       TNYNPGDQSTDYGIFQINSHYWCNNGKTPGAVNACHISCNALLQDNIADAVTCAKRVVSD
LYC_PAPAN       TNYNPGDQSTDYGIFQINSHYWCNNGKTPGAVNACHISCNALLQDNIADAVTCAKRVVSD
LYC_MIOTA       TNYNPGDQSTDYGIFQINSHYWCNNGKTPGAVNACHISCNALLQDNIADAVTCAKRVVRD
LYC_ALLNI       TNYNPGDQSTDYGIFQINSHYWCNNGKTPGAVNACRISCNALLQDNIADAVTCAKRVVRD
LYC_CERAE       TNYNPGDQSTDYGIFQINSHYWCNNGKTPGAVNACHISCNALLQDNIADAVTCAKRVVRD
LYC_PYGNE       TNYNPGDESTDYGIFQINSRYWCNNGKTPGAVDACHISCSALLQNNIADAVACAKRVVSD
LYC_PREEN       TNYNPGDESTDYGIFQINSRYWCNNGKTPGAVDACHISCSALLQNNIADAVACAKRVVSD
LYC_NASLA       TNYNPGDESTDYGIFQINSRYWCNNGKTPGAVDACHISCSALLQNNIADAVACAKRVVSD
LYC_COLAN       TNYNPGDESTDYGIFQINSRYWCNNGKTPGAVNACHISCNALLQNNIADAVACAKRVVSD
LYC_HUMAN       TNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRD
LYC_GORGO       TNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRD
LYC_PONPY       TNYNPGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRD
LYC_HYLLA       TNYNPGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCNALLQDNIADAVACAKRVVRD
LYC_SAGOE       TNYNPGDQSTDYGIFQINSHYWCNNGRTPGAVNACHISCNALLQDDITEAVACAKRVVRD
LYC_CALJA       TNYNPGDQSTDYGIFQINSHYWCNNGRTPGAVNACHISCNALLQDDITEAVACAKRVVRD
LYC_SAISC       TNYNPGDQSTDYGIFQINSHYWCNNGRTPGAVNACHISCNALLQDDITQAVACAKRVVRD
                ****.**.***********:****:*:*****:**::**.****::*::**:****** *

LYC_MACMU       PQGIRAWVAWRNHCQNRDVSQYVQGCGV
LYC_PAPAN       PQGIRAWVAWRNHCQNRDVSQYVQGCGV
LYC_MIOTA       PQGIRAWVAWRNHCHNRDVSQYVQGCGV
LYC_ALLNI       PQGIRAWVAWRNHCQNRDVSQYVQGCGV
LYC_CERAE       PQGIRAWVAWRNHCQNRDVSQYVQGCGV
LYC_PYGNE       PQGVRAWVAWRNHCQNKDVSQYVKGCGV
LYC_PREEN       PQGIRAWVAWRNHCQNKDVSQYVKGCGV
LYC_NASLA       PQGIRAWVAWRNHCQNRDVSQYVKGCGV
LYC_COLAN       PQGIRAWVAWKKHCQNRDVSQYVEGCGV
LYC_HUMAN       PQGIRAWVAWRNRCQNRDVRQYVQGCGV
LYC_GORGO       PQGIRAWVAWRNRCQNRDVRQYVQGCGV
LYC_PONPY       PQGIRAWVAWRNRCQNRDVRQYVQGCGV
LYC_HYLLA       PQGIRAWVAWRNRCQNRDLRQYIQGCGV
LYC_SAGOE       PQGIRAWVAWKAHCQNRDVSQYIQGCGV
LYC_CALJA       PQGIRAWVAWKAHCQNRDVSQYVQGCGV
LYC_SAISC       PQGIRAWVAWKAHCQNRDVSQYVQGCGV
                ***:******: :*:*:*: **::****

Gergo Kiss 30th March 1999 EMBL/Szeged