FUNPEP: Information system for "low complexity sequence regions".

Copyright (C) 1999, FUNPEP.

Multiple sequence alingment results for serum amyloid A sequences from SWISSPROT.

SAA_HUMAN       -----MKLLTGLVFCSLVLGVSSRSFFS----FLGEAFDGARDMWRAYSDMREANYIGSD 51
SAA_MACMU       -----------------------RSWFS----FLGEAYDGARDMWRAYSDMKEANYKNSD 33
SAA3_RABIT      -----MKLSIGIIFCFLILGVNSREWLT----FLKEAGQGAKDMWRAYSDMKEANYKNSD 51
SAA3_HUMAN      -----MKLSTGIIFCSLVLGVSSQGWLT----FLKAAGQGAKDMWRAYSDMKEANYKKSD 51
SAA1_MESAU      -----MKPFVAIIFCFLILGVDSQRWFQ----FMKEAGQGTRDMWRAYTDMREANWKNSD 51
SAA2_MESAU      -----MKPFLSIIFCFLVLGVDSQRWFQ----FMKEAGQGTRDMWRAYTDMREANWKNSD 51
SAA3_MESAU      -----MKPFLAIIFCFLILGVDSQRWFQ----FMKEAGQGSTDMWRAYSDMREANWKNSD 51
SAA3_MOUSE      -----MKPSIAIILCILILGVDSQRWVQ----FMKEAGQGSRDMWRAYSDMKKANWKNSD 51
SAA2_MOUSE      -----MKLLTSLVFCSLLLGVCHGGFFS----FIGEAFQGAGDMWRAYTDMKEAGWKDGD 51
SAA1_MOUSE      -----MKLLTSLVFCSLLLGVCHGGFFS----FVHEAFQGAGDMWRAYTDMKEANWKNSD 51
SAA5_MESAU      -------------------------WFS----FIREAYQGAEDMWRAYSDMKEANWRDSD 31
SAA_MACEU       -----MKLLTSLFLLSLVLCVNSQGWLRDSLDFLNQARLGAGDMWRAYRDMREANFKNSD 55
SAA1_RABIT      -----MKLLSGLLLCSLVLGVSSQRWFS----FIGEATQGAWDMWRAYSDMREANYINAD 51
SAA2_RABIT      -----MKLLSGLLLCSLVLGVSGQGWFS----FIGEAVRGAGDMWRAYSDMREANYINAD 51
SAA2_MUSVI      -----MKLFTGLIFCSLVLGVSSQ-WYS----FIGEAVQGAWDMYRAYSDMREANYKNSD 50
SAA1_MUSVI      -----MKLFTGLIFCSLVLGVSSQ-WYS----FIGEAAQGAWDMYRAYSDMIEAKYKNSD 50
SAA_CANFA       -----MKLFPGLLFCSLVLGVSGQ-WYS----FVSEAAQGAWDMWRAYSDMREANYKNSD 50
SAA_BOVIN       -----------------------Q-WMS----FFGEAYEGAKDMWRAYSDMREANYKGAD 32
SAA_SHEEP       -----------------------Q-WLS----FLGEAYEGAKDMWRAYSDMREANFKGAD 32
SAA_FELCA       -----------------------E-WYS----FLGEAAQGAWDMWRAYSDMREANYIGAD 32
SAA_HORSE       -------------------------LLS----FLGEAARGTWDMLRAYNDMREANYIGAD 31
SAA_ANAPL       MRLCICFVLLAVIVCASADNPFTR-GGR----FVLDAAGGAWDMLRAYRDMREANHIGAD 55
SAA4_MOUSE      -----MRLATVIVLCSLFLGVSGDGWYS----FFREAVQGTWDLWRAYRDNLEANYQNAD 51
SAA4_HUMAN      -----MRLFTGIVFCSLVMGVTSESWRS----FFKEALQGVGDMGRAYWDIMISNHQNSN 51
                                                *.  *  *  *: *** *   :    .:

SAA_HUMAN       KYFHARGNYDAAKRGPGGVWAAEAISDARENIQ--------RFF-GHGAEDSLADQAANE 102
SAA_MACMU       KYFHARGNYDAAQRGPGGVWAAEVISDARENIQ--------KLL-GHGAEDT-------- 76
SAA3_RABIT      KYFHARGNYDAAKRGPGGVWAAEVISDARENYQ--------KLI-GRGAEDSKADQEANQ 102
SAA3_HUMAN      KYFHARGNYDAVQRGPGGVWATEVISDARENVQ--------RLT-GDHAEDSLAGQATNK 102
SAA1_MESAU      KYFHARGNYDAAQRGPGGAWAAKVISDAREGFK--------RIT-GRGIEDSRADQFANE 102
SAA2_MESAU      KYFHARGNYDAAQRGPGGAWAAKVISDAREGFK--------RMR-GRGIEDSRADQFANE 102
SAA3_MESAU      KYFHARGNYDAAKRGPGGAWAAKVISDAREGIQ--------RFT-GRGAADSRADQFANK 102
SAA3_MOUSE      KYFHARGNYDAARRGPGGAWAAKVISDAREAVQ--------KFT-GHGAEDSRADQFANE 102
SAA2_MOUSE      KYFHARGNYDAAQRGPGGVWAAEKISDARESFQ--------EFF-GRGHEDTMADQEANR 102
SAA1_MOUSE      KYFHARGNYDAAQRGPGGVWAAEKISDGREAFQ--------EFF-GRGHEDTIADQEANR 102
SAA5_MESAU      KYFHARGNYDAAKRGPGGVWAAEVISDAREGIQ--------SLM-GRGHEDSMADQEANR 82
SAA_MACEU       KYFHARGNYDAAKRGPGGVWAAEVLSDAREFLQG-------GSS-GRGVEDSMADQEANR 107
SAA1_RABIT      KYFHARGNYDAAQRGPGGVWAAKVISDAREDLQ--------RLM-GHGAEDSMADQAANE 102
SAA2_RABIT      KYFHARGNYDAAQRGPGGVWAAKVISDVREDLQ--------RLM-GHGAEDSMADQAANE 102
SAA2_MUSVI      KYFHARGNYDAAQRGPGGAWAAKVISDARERSQRVTDLFKYGDS-GHGVEDSKADQAANE 109
SAA1_MUSVI      KYFHARGNYDAAQRGPGGAWAAKVISDARERSQRITDLIKYGDS-GHGVEDSKADQAANE 109
SAA_CANFA       KYFHARGNYDAAQRGPGGAWAAKVISDARENSQRITDLLRFGDS-GHGAEDSKADQAANE 109
SAA_BOVIN       KYFHARGNYDAAQRGPGGAWAAKVISDARENIQRFTDPLFKGTTSGQGQEDSRADQAANE 92
SAA_SHEEP       KYFHARGNYDAAQRGPGGVWAAEVISNGREALQGITDPLFKGMTRDQVREDTKADQFANE 92
SAA_FELCA       KYFHARGNYDAAQRGPGGAWAAKVISDARENSQRVTDFFRHGNS-GHGAEDSKADQEWG- 90
SAA_HORSE       KYFHARGNYDAAKRGPGGAWAAKVISDARENFQRFTDRFSFGGS-GRABZ---------- 80
SAA_ANAPL       KYFHARGNYDAARRGPGGAWAARVISDARENWQG-------GVS-GRGAEDTRADQEANA 107
SAA4_MOUSE      QYFYARGNYEAQQRGSGGIWAAKIISTSRKYFQGLLNRYYFGIR-NHGLETLQATQKAEE 110
SAA4_HUMAN      RYLYARGNYDAAQRGPGGVWAAKLISRSRVYLQGLIDYYLFGNS-STVLEDSKSNEKAEE 110
                :*::*****:* :**.** **:. :*  *   :            .              

SAA_HUMAN       WGRSGKDPNHFRPAGLPEKY 122
SAA_MACMU       --------------------
SAA3_RABIT      WGRSGNDPNHFRPKGLPDKY 122
SAA3_HUMAN      WGQSGKDPNHFRPAGLPEKY 122
SAA1_MESAU      WGRSGKDPNFFRPPGLPSKY 122
SAA2_MESAU      WGRSGKDPNFFRPPGLPSKY 122
SAA3_MESAU      WGRSGKDPNHFRPAGLPSKY 122
SAA3_MOUSE      WGRSGKDPNHFRPAGLPKRY 122
SAA2_MOUSE      HGRSGKDPNYYRPPGLPAKY 122
SAA1_MOUSE      HGRSGKDPNYYRPPGLPDKY 122
SAA5_MESAU      WGRSGNDPNHYRPAGLPDKY 102
SAA_MACEU       WGRSGKDPNRYRPKGLDPKY 127
SAA1_RABIT      WGRSGKDPNHFRPKGLPDKY 122
SAA2_RABIT      WGRSGKDPNHFRPKGLPDKY 122
SAA2_MUSVI      WGRSGKDPNHFRPSGLPDKY 129
SAA1_MUSVI      WGRSGKDPNHFRPPGLPDKY 129
SAA_CANFA       WGRSGKDPNHFRPAGLPDKY 129
SAA_BOVIN       WGRSGKDPNHFRPAGLPDKY 112
SAA_SHEEP       WGRSGKDPNHFRPPGLPDKY 112
SAA_FELCA       --------------------
SAA_HORSE       --------------------
SAA_ANAPL       WGRNGGDPNRYRPPGLPSKY 127
SAA4_MOUSE      WGRSGKNPNHFRPEGLPEKF 130
SAA4_HUMAN      WGRSGKDPDRFRPDGLPKKY 130

Gergo Kiss 2nd April 1999 EMBL/Szeged