BIOcomputing 3D modelling servers    BIOcomputing 3D modelling unit servers  EMBL

Welcome to the EMBL biocomputing 3D modelling unit server page.

WHAT IF Web Services

We have growing collection of services freely and easily accessible accessible over the web, all based on WHAT IF. These new services are running on the latest hardware and software. Feel free to give us feedback. We should be able to quickly add requests! Click here for access to these servers.

The servers listed below are not based on WHAT IF, but nevertheless useful.

Searching databases and predicting/verifying structures

The following list holds servers that are vaguely related to modelling. They are all the result of work done in the Sander group at EMBL 1988-1997 and/or the Vriend group.


PredictProtein.
Multiple alignments; predictions of secondary structure, accessibility, and helical transmembrane regions; (threading); evaluation of prediction accuracy.


K2D
Protein secondary structure prediction from CD spectra.


PROPSEARCH
Compositional search of sequence databases using a sequence or experimental amino acid analysis data.


MAXSPROUT
(Re)constructing full coordinates from C-alpha atoms.


DALI.
Comparison of protein structures in 3D


Protein Structure Verification
'BIOTECH' Protein Structure Verification server.


Small molecule topology maker
The PRODRG server takes a small molecule and produces WHATIF and GROMOS topology files.


GV, Last modified Jan 20, 1999