The Ramachandran Plot Server



The methods:

Currently there are two methods, one is typing in the PDB ID, to get the structure file directly from our PDB directory, and the other is just submitting your own structure in PDB format.

In the fisrt case we will check for the availability or this PDB structure in our PDB directory, and we will check in the PDB_REPORT if this file is deemed to be good and can be read with WHAT_IF (there are some structures that have too many problems), If everything is OK, we will run WHAT_IF on the Structure and you will have the plot directly on your browser.

The second method is much more simple, we will get your file and run directly WHAT_IF on it to get the plot.

Using a file from our PDB directory:

Please type the PDB ID of the structure,

Then type the molecule number,

And press the button to

Sending your own structure:

Note: We are using the File Upload mechanism described in RFC 1867, this mechanism has been implemented in Netscape from version 2.0 up.
If you are using any Netscape version above 2.0 and you receive an error message immediately after clicking the "send the files" button, then try again after having disabled the Netscape Proxy option.

Oh! by the way if you have the litle mistake of sending a directory instead of a file, you will not get the next page inmediately, instead, the browser will say that is contacting us, but it will take almost forever.

If you want to save time sending long files, you can compress them using the standard UNIX compress or GNU gzip

Please input below the filename of your structure,

Then type the molecule number,

And press the button to

This page is modrama-submit.html
If you have detected any error, or have any question or sugestion, please send us a mail,
Rolando Rodriguez, Gert Vriend.